C0nc0rdance reads Darwin

Yes I know Sunday was Darwin day sorry I am a few days late. As a treat here is a selection for Darwin's On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life, see my copy here, read by C0nc0rdance, see a previous reading by him here. The recording isn't great but he ends with one of my favorite lines:

There is grandeur in this view of life, with its several powers, having been originally breathed into a few forms or into one; and that, whilst this planet has gone cycling on according to the fixed law of gravity, from so simple a beginning endless forms most beautiful and most wonderful have been, and are being, evolved.

Himalayan Glacial Melt

So as I covered in my last post, and many others, climate change is happening and we know this through several different lines of evidence. One of those lines of evidence is ice loss and while most of the focus has been on sea ice, particularly in the Arctic, continental glaciers, like those on Antarctica and Greenland, have been losing ice as well. A new study was recently released that set to find out how much and showed that overall these continental glaciers are losing ice. The news media decided to pick on something else from the paper and that was the Himalayan glaciers and decided for some reason that over the last 10 years there has been no ice melting there. Potholer54 decided to actually read the paper and he decided to point out what the media decided to ignore.

Climate Change is Real!

This week's eSkeptic featured an article by Dr. Donald Prothero in which he discusses climate change; how we know it occurring, how we know we are causing it, and why people try to deny it. It is overall a good article and he presents many facts so I recommend you read it in its entirety (this link will skip the heading portion of this week's eSkeptic) but I wanted to focus on one thing he said.

“I agree that climate is changing, but I’m skeptical that humans are the main cause, so we shouldn’t do anything.” This is just fence sitting. A lot of reasonable skeptics deplore the “climate denialism” of the right wing, but still want to be skeptical about the cause. If they want proof, they can examine the huge array of data that directly points to humans causing global warming.²⁰ We can directly measure the amount of carbon dioxide humans are producing, and it tracks exactly with the amount of increase in atmospheric carbon dioxide. Through carbon isotope analysis, we can show that this carbon dioxide in the atmosphere is coming directly from our burning of fossil fuels, not from natural sources. We can also measure oxygen levels that drop as we produce more carbon that then combines with oxygen to produce carbon dioxide. We have satellites in space that are measuring the heat released from the planet and can actually see the atmosphere get warmer. The most crucial proof emerged only in the past few years: climate models of the greenhouse effect predict that there should be cooling in the stratosphere (the upper layer of the atmosphere above 10 km (6 miles) in elevation, but warming in the troposphere (the bottom layer of the atmosphere below 10 km (6 miles), and that’s exactly what our space probes have measured. Finally, we can rule out any other culprits (see above): solar heat is decreasing since 1940, not increasing, and there are no measurable increases in cosmic radiation, methane, volcanic gases, or any other potential cause. Face it—it’s our problem.

I will admit I was at this point for a few years as well but it is the combination of all the evidence that he mentions, along with other pieces of evidence, that eventually made me realize I was wrong. That is how science works and that is why people who are ignoring the science of climate change are wrong.

Deep Time

As a geologist I try my best to understand deep time. Deep time refers to the history of the planet that we find in the fossil record as well as within the rock record and in what we can see in outer space about the formation of the universe. I try to reach out to make it accessible to everyone who is a reader of this blog and try to make it accessible in some of the long running series that I have such as the National Park Service series in which I try to incorporate geology as best I can for parks that don't always deal with geology at all. One of my favorite blogs, Love in the Time of Chasmosaurs, does science outreach in a more fun and interesting way. That is why when I saw this post over there yesterday I knew I had to link to it, seriously read their post, and share the video of David Christian discussing the importance of understanding deep time, what he calls big history, during a TED talk. This is why I blog what I do, we need to understand our place in the universe to truly understand who we are!

Archaeopteryx: The Icon of Evolution

As with the museum posts(page) it really don't make sense search wise to name my book review posts book review # so I am going to go to naming them the title of the book for simplicities sake. Now on to the review.

It was a typical day in the Late Jurassic (Tithonian to be specific) on a small island located in the Tethys Ocean on what is currently the Bavarian region of Germany. The climate was warm and dry and the sun was beaming down on the small bush sized plants that covered the island. Out over the sea a group of pterosaurs (for me I will say Rhamphorhynchus muensteri) caught fish that swam to close to the surface near the reef while the breath of some of the marine reptiles (e.g. ichthyosaurs) broke the surface on occasion. On shore small theropod dinosaurs poked around in the bushes hoping to find a lizard or insect that they may be able to eat. The young Archaeopteryx had watched this scene play out plenty of times but only recently away from the safety of her mother's nest but at least now she could fly, well at least short distances and her flight wasn't very powerful due to her sternal keel still being cartilage. Her black feathers glistened in the sunlight and as a curious Compsognathus got too close she snapped her toothed jaw at it and flew slightly higher out of grasp for the dinosaur. She of course was a dinosaur too but there was something special about her she also had a lot of features that made her look more bird like than dinosaur like except for her long tail and her toothed "beak", and she certainly wasn't the first dinosaur to look bird-like but she would become when discovered one of the most important. As she looked out over the sea toward the dark black clouds that had been approaching for a while now she realized she was hungry it had been a while since she ate after all. Something hit her on the head and then more and more she wasn't quite sure what this was after all it hadn't rained, at least not much, her entire life. The rain drops also disturbed a dragonfly nearby from the branch it was sitting on and she took off after it. As she closed in a strong gust of wind blew her out over the reef, this was further out to sea than she had ever been. She looked toward shore and then the wind picked up even more. 150 million years later, in 1861, a slab of limestone is split from a quarry in the Solnhofen formation and she would again see the light of a new day but the world would be completely different than the one she lived in but she too would change it greatly.

While that story is clearly fictional the idea behind it is the vast amount of information that we have learned about Archaeopteryx lithographica since the first one was discovered in 1861. While most of this knowledge has been out there for years the first time that I truly saw it all compiled in one place was in a book I just finished called Archaeopteryx: The Icon of Evolution by Dr. Peter Wellnhofer (someone really needs to update and expand on his Wikipedia page). In this book we are taken to Solnhofen where we learn about the limestone that Archaeopteryx was deposited in and how this helps understand the environment that this animal lived in. We then learn about the animal itself and Dr. Wellnhofer tries to fit it into a phylogenetic location which includes a discussion on the different views of how birds evolved as well as the evolution of flight. While there have only been a total of ten (well eleven but the most recent one hasn't been published on yet and was just found late in 2011) body specimens and one isolated feather found we know so much about this animal. Part of the reason is how complete the specimens are with most being nearly complete but what I think the main reason for the amount we know about the animal is the just sheer amount of research that has been done on the specimens since it was the first animal found that truly showed the evolution of organisms in action, in this case the evolution of dinosaurs to birds.

This book is exceptionally well written and that is due to the sheer amount of knowledge that Dr. Wellnhofer has on paleontology and in particular the Solnhofen region. If you want to learn about Archaeopteryx or if you want to learn about Solnhofen geology or if you just want a book with really really nice pictures of really amazing fossils this is the book for you. Detailed images of all 10 of the specimens are included including pictures taken using infrared which really helps show off a lot of the soft tissue preserved in the specimen. There is a detailed description of the genus in general as well as where it fits evolutionarily which includes a very through description of the origin of birds including the many hypothesis of what the evolved from, and he, logically, leans toward them evolving from theropod dinosaurs. There is also a brief overview of the different ideas of how flight and feathers evolved and a basic overview of known, as of 2009, Mesozoic bird species.

If there is one fault in the book it is that it is too detailed. At times I felt like I was dredging through scientific papers, this is part of the reason it took me so long to finish, so if you aren't an expert in the field or haven't spent a lot of time reading scientific papers on dinosaur and bird evolution you might struggle a bit through parts. Most of the book is easily readable and the parts that are technical can be skipped or skimmed over without missing the overall point or theme of the section so don't let the technical nature scare you off. The price might scare you off but it is worth it for all the knowledge contained within.

The only other problem is that the book is dated which should say something about how fast the science has come since 2009. This is really that much of a problem after all how was Dr. Wellnhofer supposed to know that since I started reading the book early last year that phylogenetic studies would say that Archaeopteryx is not a bird (Naish et al., 2011; Xu et al. 2011), although at least one study disagrees (Lee & Worthy, 2011), that the color of the feathers would be determined (Carney et al., 2012), and that an even earlier feathered dinosaur would be discovered (Liu et al., 2012) (I got the e-mail about that last one as I was working on this review). So I will forgive the book seemingly being slightly dated since there are so many new specimens found in the paleontology world every year, there have been several new Mesozoic birds found in the past year (e.g. Xu et al., 2011).

This book is very interesting and worth picking up. It is a handy reference for the currently known specimens as well as about the evolution of birds in general. Oh and did I mention it has very awesome pictures, yeah they are very pretty. I will leave you, again, with a picture of the one specimen of Archaeopteryx that I have seen, the Thermopolis specimen, it was a great experience.

Book citation
Wellnhofer, P. 2009. Archaeopteryx: The Icon of Evolution. Verlag Dr. Friedrich Pfeil, Munchen, 208p.

References
Lee, M. S. Y., & T. H. Worthy. 2011. Likelihood reinstates Archaeopteryx as a primitive bird. Biology Letters doi: 10.1098/rsbl.2011.0884.

Liu, Y.-Q., Kuang, H.-W., Jiang, X.-J., Peng, N., Xu, H., & Sun, H.-Y. 2012. Timing of the earliest known feathered dinosaurs and transitional pterosaurs older than the Jehol Biota. Palaeogeography, Palaeoclimatology, Palaeoecology doi: 10.1016/j.palaeo.2012.01.017.

Naish, D., Dyke, G., Cau, A., Escuillié, F. & Godefroit, P. 2011. A gigantic bird from the Upper Cretaceous of Central Asia. Biology Letters doi: 10.1098/rsbl.2011.0683 (I should note that there is some doubt if this is actually a bird anymore but that shouldn't change the phylogentic tree published within)

Xu, X., You, H., Du, K. & Han, F. 2011. An Archaeopteryx-like theropod from China and the origin of Avialae. Nature 475, 465-470.

Book review page

Housekeeping

I wanted to cover a few housekeeping items in this post but they will be short and to the point.

The first thing I wanted to point out is that I have added links on the National Park Service Series as well as the Museum Visit pages so they are easier to navigate. Now you can click the link on the page for the state postal abbreviation and it should take you to the state (if you don't know the state postal abbreviation I have included a link on both pages to a Wikipedia page with a listing of them and it can also be found here). This doesn't mean I have filled in many of the states yet there are still a lot of blanks but I wanted to make it easier for the future or so you at least don't have to scroll as far for the sites I have visited.

I have also created a new page that will link to the book reviews. This will allow you to look back at past book reviews if you want and will save me the time energy and space of having to link to a bunch of pages at the bottom of each book review. The books are organized by title, I know it should have been author's last name but well I was working on it at 2am so give me a break I will try to put up a portion organized by author later, so if you know the title you are looking for you can get to the review I have done. I am also always looking for additional ideas of books to review so if you want to leave them on that page go right ahead. On that note I should also point out that there should be a new book review coming out either this afternoon or tomorrow so look for that.

That is all I have but I welcome any comments that you all have. I was thinking of writing up a few posts on the geology of certain regions as well as starting a series on zoos I have been to so let me know what you think of those ideas and if you have any other ideas go ahead and post them in the comments.